Application of Deep Learning in Generating Structured Radiology Reports: A Transformer-Based Technique
Journal Article
Moezzi, S. A. R., Ghaedi, A., Rahmanian, M., Mousavi, S. Z., & Sami, A. (in press)
Application of Deep Learning in Generating Structured Radiology Reports: A Transformer-Based Technique. Journal of Digital Imaging, https://doi.org/10.1007/s10278-022-00692-x
Since radiology reports needed for clinical practice and research are written and stored in free-text narrations, extraction of relative information for further analysis is di...
De novo design of novel protease inhibitor candidates in the treatment of SARS-CoV-2 using deep learning, docking, and molecular dynamic simulations
Journal Article
Arshia, A. H., Shadravan, S., Solhjoo, A., Sakhteman, A., & Sami, A. (2021)
De novo design of novel protease inhibitor candidates in the treatment of SARS-CoV-2 using deep learning, docking, and molecular dynamic simulations. Computers in Biology and Medicine, 139, Article 104967. https://doi.org/10.1016/j.compbiomed.2021.104967
The main protease of SARS-CoV-2 is a critical target for the design and development of antiviral drugs. 2.5 M compounds were used in this study to train an LSTM generative net...
An Empirical Study of C++ Vulnerabilities in Crowd-Sourced Code Examples
Journal Article
Verdi, M., Sami, A., Akhondali, J., Khomh, F., Uddin, G., & Karami Motlagh, A. (2022)
An Empirical Study of C++ Vulnerabilities in Crowd-Sourced Code Examples. IEEE Transactions on Software Engineering, 48(5), 1497-1514. https://doi.org/10.1109/tse.2020.3023664
Software developers share programming solutions in Q&A sites like Stack Overflow, Stack Exchange, Android forum, and so on. The reuse of crowd-sourced code snippets can facili...