Temporal Multivariate Networks.
Book Chapter
Archambault, D., Abello, J., Kennedy, J., Kobourov, S., Ma, K., Miksch, S., …Telea, A. C. (2014)
Temporal Multivariate Networks. In A. Kerren, H. Purchase, & M. Ward (Eds.), Multivariate Network Visualization, 151-175. Springer-Verlag. https://doi.org/10.1007/978-3-319-06793-3_8
In this chapter, we define, characterize, and summarize the data and visualization techniques relating to temporal multivariate networks. Section 2.1.1 provides definitions an...
Vesper: Visualising species archives
Journal Article
Graham, M., & Kennedy, J. (2014)
Vesper: Visualising species archives. Ecological Informatics, 24, 132-147. https://doi.org/10.1016/j.ecoinf.2014.08.004
Vesper (Visual Exploration of SPEcies-referenced Repositories) is a tool that visualises Darwin Core Archive (DwC-A) datasets, and is aimed at reducing the amount of time and ...
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees
Journal Article
Paterson, T., Graham, M., Kennedy, J., & Law, A. (2012)
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees. BMC Bioinformatics, 13/8, https://doi.org/10.1186/1471-2105-13-S8-S5
Pedigree genotype datasets are used for analysing genetic inheritance and to map genetic markers and traits. Such datasets consist of hundreds of related animals genotyped for...
A comparison of techniques for name matching
Journal Article
Peng, T., Li, L., & Kennedy, J. (2012)
A comparison of techniques for name matching. GSTF journal on computing, 2,
Information explosion is a problem for everyone nowadays. It is a great challenge to all kinds of businesses to maintain high quality of data in their information applications...
MaTSE: The microarray time-series explorer
Conference Proceeding
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2012)
MaTSE: The microarray time-series explorer. In 2012 IEEE Symposium on Biological Data Visualization (BioVis), (41-48). https://doi.org/10.1109/biovis.2012.6378591
This paper describes the design, development and evaluation of the Microarray Time-Series Explorer (MaTSE), a novel information visualization application for the exploratory a...
Form
Book Chapter
Kennedy, J., & Cannon, A. (2009)
Form. In L. Liu, & M. T. Özsu (Eds.), Encyclopedia of Database SystemsSpringer-Verlag
Refactoring data transforms in MaTSE for flexibility.
Presentation / Conference
Craig, P., & Kennedy, J. (2009, October)
Refactoring data transforms in MaTSE for flexibility
In early prototypes of the Microarray Time-series Explorer
(MaTSE) data transforms were tightly coupled with visualisation components. While this allowed us to achieve our ini...
Re-architecting Visualizations to Java Swing.
Presentation / Conference
Graham, M., & Kennedy, J. (2009, October)
Re-architecting Visualizations to Java Swing. Paper presented at REVISE: Refactoring Visualization from Experience, VizWeek Workshop
A standard data model representation for taxonomic information.
Journal Article
Kennedy, J., Hyam, R., Kukla, R., & Paterson, T. (2006)
A standard data model representation for taxonomic information. OMICS, 10, 220-230. doi:10.1089/omi.2006.10.220
The names used by biologists to label the observations they make are imprecise. This is an issue as workers increasingly seek to exploit data gathered from multiple, unrelated...
Scientific names are ambiguous as identifiers for biological taxa: their context and definition are required for accurate data integration
Conference Proceeding
Kennedy, J., Kukla, R., & Paterson, T. (2005)
Scientific names are ambiguous as identifiers for biological taxa: their context and definition are required for accurate data integration. In B. Ludaescher, & L. Raschid (Eds.), Data Integration in the Life Sciences, 80-95. https://doi.org/10.1007/11530084_8
Biologists use scientific names to label the organisms described in
their data; however, these names are not unique identifiers for taxonomic entities.
Alternative taxonomic c...