Animated interval scatter-plot views for the exploratory analysis of large scale microarray time-course data.
Journal Article
Craig, P., Kennedy, J., & Cumming, A. (2005)
Animated interval scatter-plot views for the exploratory analysis of large scale microarray time-course data. Information Visualization, 4, 149-163. doi:10.1057/palgrave.ivs.9500101
Microarray technologies are a relatively new development that allow biologists to monitor the activity of thousands of genes (normally around 8,000) in parallel across multipl...
An open model-based interface development system: The Teallach approach.
Conference Proceeding
Griffiths, T., McKirdy, J., Paton, N. W., Kennedy, J., Cooper, R., Barclay, P. J., …Dinn, A. (1998)
An open model-based interface development system: The Teallach approach. In P. Markopoulos, & P. Johnson (Eds.), Design, Specification and Verification of Interactive Systems '98. Proceedings of the Eurographics Workshop, 34-50
The goal of the Teallach project is to provide facilities for the systematic development of interfaces to object databases in a manner which is independent of both a specific ...
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees
Journal Article
Paterson, T., Graham, M., Kennedy, J., & Law, A. (2012)
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees. BMC Bioinformatics, 13/8, https://doi.org/10.1186/1471-2105-13-S8-S5
Pedigree genotype datasets are used for analysing genetic inheritance and to map genetic markers and traits. Such datasets consist of hundreds of related animals genotyped for...
Using curves to enhance parallel coordinate visualisations
Conference Proceeding
Graham, M., & Kennedy, J. (2003)
Using curves to enhance parallel coordinate visualisations. In E. Banissi, K. Börner, C. Chen, G. Clapworthy, C. Maple, A. Lobben, …J. Zhang (Eds.), Proceedings on Seventh International Conference on Information Visualization, 2003. IV 2003, 10-16. doi:10.1109/iv.2003.1217950
This paper introduces a number of refinements to the Parallel Coordinates visualisation metaphor for multi-dimensional data. Firstly, the traditional set of poly-lines are rep...
Time-series Explorer: An Animated Information Visualisation for Microarray Time-course Data
Journal Article
Craig, P., Kennedy, J., & Cumming, A. (2005)
Time-series Explorer: An Animated Information Visualisation for Microarray Time-course Data. BMC Bioinformatics, 6(Suppl 3), P8. https://doi.org/10.1186/1471-2105-6-S3-P8
Microarray technologies are a relatively new development that allow biologists to monitor the activity of thousands of genes (normally around 8,000) in parallel across multipl...
MaTSE: The microarray time-series explorer
Conference Proceeding
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2012)
MaTSE: The microarray time-series explorer. In 2012 IEEE Symposium on Biological Data Visualization (BioVis), (41-48). https://doi.org/10.1109/biovis.2012.6378591
This paper describes the design, development and evaluation of the Microarray Time-Series Explorer (MaTSE), a novel information visualization application for the exploratory a...
A Simulation of Interactions Between the Critically Endangered North Atlantic Right Whale Eubalaena glacialis and Shipping using Dynamically Variable Temporal Granularity to Minimise Run Time
Conference Proceeding
Clyne, H., & Kennedy, J. (2001)
A Simulation of Interactions Between the Critically Endangered North Atlantic Right Whale Eubalaena glacialis and Shipping using Dynamically Variable Temporal Granularity to Minimise Run Time. In F. Ghassemi, D. White, D. Cuddy, & T. Nakanishi (Eds.), MODSIM 2001 : International Congress on Modelling and Simulation, the Australian National University, Canberra, Australia, 10-13 December 2001 : integrating models for natural resources management across disciplines, issues and scales : proceedings, 813-818
Collisions with ships are a major cause of mortality (~35%) for the severely endangered North Atlantic right whale Eubalaena glacialis, currently numbering only around 370 ind...
Novel visualisation techniques for working with multiple, overlapping classification hierarchies
Journal Article
Graham, M., Watson, M. F., & Kennedy, J. (2002)
Novel visualisation techniques for working with multiple, overlapping classification hierarchies. Taxon, 51, 351-358
A Java-based program is presented that provides a visualisation tool for display of and comparison between classification hierarchies. Taxa, or groups of taxa, can be tracked ...