MaTSE: the gene expression time-series explorer.
Journal Article
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2013)
MaTSE: the gene expression time-series explorer. BMC bioinformatics, 14, https://doi.org/10.1186/1471-2105-14-S19-S1
Background
High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatmen...
MaTSE: The microarray time-series explorer
Conference Proceeding
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2012)
MaTSE: The microarray time-series explorer. In 2012 IEEE Symposium on Biological Data Visualization (BioVis), (41-48). https://doi.org/10.1109/biovis.2012.6378591
This paper describes the design, development and evaluation of the Microarray Time-Series Explorer (MaTSE), a novel information visualization application for the exploratory a...
Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data.
Conference Proceeding
Craig, P., Cannon, A., Kennedy, J., & Kukla, R. (2010)
Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. In Y. Luo (Ed.), Cooperative Design, Visualization, and Engineering, 199-206. https://doi.org/10.1007/978-3-642-16066-0_30
This paper presents work to support collaborative visualisation and data analysis in the microarray time-series explorer (MaTSE) software. We introduce a novel visualisation c...
Form
Book Chapter
Kennedy, J., & Cannon, A. (2009)
Form. In L. Liu, & M. T. Özsu (Eds.), Encyclopedia of Database SystemsSpringer-Verlag
The Prometheus Description Model: an examination of the taxonomic description-building process and its representation
Journal Article
Pullan, M. R., Armstrong, K. E., Paterson, T., Cannon, A., Kennedy, J. B., Watson, M. F., …Raguenaud, C. (2005)
The Prometheus Description Model: an examination of the taxonomic description-building process and its representation. Taxon, 54(3), 751-765. https://doi.org/10.2307/25065431
A model for representing taxonomic descriptive data is presented. The model has been developed in response to the growing requirement for the global exchange of descriptive da...
Ontology-Driven Automated Generation of Data Entry Interfaces to Databases
Conference Proceeding
Cannon, A., Kennedy, J. B., Paterson, T., & Watson, M. F. (2004)
Ontology-Driven Automated Generation of Data Entry Interfaces to Databases. In H. Williams, & L. Mackinnon (Eds.), Key Technologies for Data Management; Lecture Notes in Computer Science, 150-164. doi:10.1007/978-3-540-27811-5_15
This paper discusses an ontology based approach for the automatic generation of data entry interfaces to databases. An existing domain ontology is mapped to a system domain mo...
A universal character model and ontology of defined terms for taxonomic description.
Conference Proceeding
Paterson, T., Kennedy, J., Pullan, M. R., Cannon, A., Armstrong, K. E., Watson, M. F., …Russell, G. (2004)
A universal character model and ontology of defined terms for taxonomic description. In E. Rahm (Ed.), Proceedings of Data Integration in the Life Sciences (DILS), 63-78
Taxonomists classify biological specimens into groups (taxa) on the basis of similarities between their observed features (characters). The description of these characters is ...
A methodology for composing well-defined character descriptions.
Report
Paterson, T., Cannon, A., Raguenaud, C., Russell, G., Armstrong, K. E., MacDonald, S. M., …Kennedy, J. (2003)
A methodology for composing well-defined character descriptions
Taxonomy has been described as “the science of documenting biodiversity”, which involves collecting, naming, describing, identifying and classifying specimens of organisms (Ke...