A Task Taxonomy for Temporal Graph Visualisation
Journal Article
Kerracher, N., Kennedy, J., & Chalmers, K. (2015)
A Task Taxonomy for Temporal Graph Visualisation. IEEE Transactions on Visualization and Computer Graphics, 21(10), 1160-1172. https://doi.org/10.1109/tvcg.2015.2424889
By extending and instantiating an existing formal task framework, we define a task taxonomy and task design space for temporal graph visualisation. We discuss the process invo...
Exploring multiple trees through DAG representations
Journal Article
Graham, M., & Kennedy, J. (2007)
Exploring multiple trees through DAG representations. IEEE Transactions on Visualization and Computer Graphics, 13, 1294-1301. https://doi.org/10.1109/TVCG.2007.70556
We present a Directed Acyclic Graph visualisation designed to allow interaction with a set of multiple classification trees, specifically to find overlaps and differences betw...
Pianola - visualization of multivariate time-series security event data.
Conference Proceeding
Thomson, A., Graham, M., & Kennedy, J. (2013)
Pianola - visualization of multivariate time-series security event data. In Proceedings of IV2013, 123-131. https://doi.org/10.1109/IV.2013.15
Monitoring log files for network intrusions is unwieldy. To build a mental model of the log, an analyst is required to recognise continuous timelines and attack patterns from ...
Visualisation to Aid Biodiversity Studies through Accurate Taxonomic Reconciliation.
Conference Proceeding
Graham, M., Craig, P., & Kennedy, J. (2008)
Visualisation to Aid Biodiversity Studies through Accurate Taxonomic Reconciliation. In W. A. Gray, K. G. Jeffery, & J. Shao (Eds.), Proceedings of British National Conference on Database Systems: Sharing Data, Information and Knowledge, 280-291. https://doi.org/10.1007/978-3-540-70504-8_29
All aspects of organismal biology rely on the accurate identification
of specimens described and observed. This is particularly important for
ecological surveys of biodiversit...
MaTSE: the gene expression time-series explorer.
Journal Article
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2013)
MaTSE: the gene expression time-series explorer. BMC bioinformatics, 14, https://doi.org/10.1186/1471-2105-14-S19-S1
Background
High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatmen...
Constructing and Evaluating Visualisation Task Classifications: Process and Considerations
Journal Article
Kerracher, N., & Kennedy, J. (2019)
Constructing and Evaluating Visualisation Task Classifications: Process and Considerations. Computer Graphics Forum, 36(3), 47-59. https://doi.org/10.1111/cgf.13167
Categorising tasks is a common pursuit in the visualisation research community, with a wide variety of taxonomies, typologies, design spaces, and frameworks having been develo...
Helium: visualization of large scale plant pedigrees.
Journal Article
Shaw, P., Graham, M., Kennedy, J., Milne, I., & Marshall, D. F. (2014)
Helium: visualization of large scale plant pedigrees. BMC Bioinformatics, 15, https://doi.org/10.1186/1471-2105-15-259
Plant breeders use an increasingly diverse range of data types to identify lines with desirable characteristics suitable to be taken forward in plant breeding programmes. Ther...
A survey of multiple tree visualisation.
Journal Article
Graham, M., & Kennedy, J. (2010)
A survey of multiple tree visualisation. Information Visualization, 9, 235-252. https://doi.org/10.1057/ivs.2009.29
This paper summarises the state-of-the-art in multiple tree visualisations. It discusses the spectrum of current representation techniques used on single trees, pairs of trees...
Evaluating the VIPER pedigree visualisation: detecting inheritance inconsistencies in genotyped pedigrees.
Conference Proceeding
Paterson, T., Graham, M., Kennedy, J., & Law, A. (2011)
Evaluating the VIPER pedigree visualisation: detecting inheritance inconsistencies in genotyped pedigrees. In 2011 IEEE Symposium on Biological Data Visualization (BioVis), 119-126. https://doi.org/10.1109/BioVis.2011.6094056
VIPER (Visual Pedigree Explorer) is a tool for exploring large complex animal pedigrees and their associated genotype data. The tool combines a novel, space-efficient visualis...
Redeeming pedigree data with an interactive error cleaning visualisation.
Conference Proceeding
Graham, M., Kennedy, J., Paterson, T., & Law, A. (2012)
Redeeming pedigree data with an interactive error cleaning visualisation. In Proceedings of Advanced Visual Interfaces 2012, 741-744. https://doi.org/10.1145/2254556.2254698
We describe a visual data cleansing application for pedigree genotype data, which is used to redeem otherwise unusable pedigree data sets. Biologists and bioinformaticians dyn...