Exploring multiple trees through DAG representations
Journal Article
Graham, M., & Kennedy, J. (2007)
Exploring multiple trees through DAG representations. IEEE Transactions on Visualization and Computer Graphics, 13, 1294-1301. https://doi.org/10.1109/TVCG.2007.70556
We present a Directed Acyclic Graph visualisation designed to allow interaction with a set of multiple classification trees, specifically to find overlaps and differences betw...
Pianola - visualization of multivariate time-series security event data.
Conference Proceeding
Thomson, A., Graham, M., & Kennedy, J. (2013)
Pianola - visualization of multivariate time-series security event data. In Proceedings of IV2013, 123-131. https://doi.org/10.1109/IV.2013.15
Monitoring log files for network intrusions is unwieldy. To build a mental model of the log, an analyst is required to recognise continuous timelines and attack patterns from ...
Visualisation to Aid Biodiversity Studies through Accurate Taxonomic Reconciliation.
Conference Proceeding
Graham, M., Craig, P., & Kennedy, J. (2008)
Visualisation to Aid Biodiversity Studies through Accurate Taxonomic Reconciliation. In W. A. Gray, K. G. Jeffery, & J. Shao (Eds.), Proceedings of British National Conference on Database Systems: Sharing Data, Information and Knowledge, 280-291. https://doi.org/10.1007/978-3-540-70504-8_29
All aspects of organismal biology rely on the accurate identification
of specimens described and observed. This is particularly important for
ecological surveys of biodiversit...
Helium: visualization of large scale plant pedigrees.
Journal Article
Shaw, P., Graham, M., Kennedy, J., Milne, I., & Marshall, D. F. (2014)
Helium: visualization of large scale plant pedigrees. BMC Bioinformatics, 15, https://doi.org/10.1186/1471-2105-15-259
Plant breeders use an increasingly diverse range of data types to identify lines with desirable characteristics suitable to be taken forward in plant breeding programmes. Ther...
A survey of multiple tree visualisation.
Journal Article
Graham, M., & Kennedy, J. (2010)
A survey of multiple tree visualisation. Information Visualization, 9, 235-252. https://doi.org/10.1057/ivs.2009.29
This paper summarises the state-of-the-art in multiple tree visualisations. It discusses the spectrum of current representation techniques used on single trees, pairs of trees...
Evaluating the VIPER pedigree visualisation: detecting inheritance inconsistencies in genotyped pedigrees.
Conference Proceeding
Paterson, T., Graham, M., Kennedy, J., & Law, A. (2011)
Evaluating the VIPER pedigree visualisation: detecting inheritance inconsistencies in genotyped pedigrees. In 2011 IEEE Symposium on Biological Data Visualization (BioVis), 119-126. https://doi.org/10.1109/BioVis.2011.6094056
VIPER (Visual Pedigree Explorer) is a tool for exploring large complex animal pedigrees and their associated genotype data. The tool combines a novel, space-efficient visualis...
Redeeming pedigree data with an interactive error cleaning visualisation.
Conference Proceeding
Graham, M., Kennedy, J., Paterson, T., & Law, A. (2012)
Redeeming pedigree data with an interactive error cleaning visualisation. In Proceedings of Advanced Visual Interfaces 2012, 741-744. https://doi.org/10.1145/2254556.2254698
We describe a visual data cleansing application for pedigree genotype data, which is used to redeem otherwise unusable pedigree data sets. Biologists and bioinformaticians dyn...
Visual cleaning of genotype data.
Conference Proceeding
Kennedy, J., Graham, M., Paterson, T., & Law, A. (2013)
Visual cleaning of genotype data. In Proceedings of BioVis 2013, 105-112. https://doi.org/10.1109/BioVis.2013.6664353
While some data cleaning tasks can be performed automatically, many more require expert human guidance to steer the cleaning process, especially if erroneous or unclean data i...
Visual comparison and exploration of natural history collections
Conference Proceeding
Graham, M., Kennedy, J., & Downey, L. (2006)
Visual comparison and exploration of natural history collections. In A. Celentano, & P. Mussio (Eds.), Advanced Visual Interfaces (AVI) 2006, Proceedings of the International Working Conference, 310-313. doi:10.1145/1133265.1133329
Natural history museum collections contain a wealth of specimen level data that is now opening up for digital access. However, current interfaces to access and manipulate this...
Visualising errors in animal pedigree genotype data
Journal Article
Graham, M., Kennedy, J., Paterson, T., & Law, A. (2011)
Visualising errors in animal pedigree genotype data. Computer Graphics Forum, 30, 1011-1020. https://doi.org/10.1111/j.1467-8659.2011.01950.x
Genetic analysis of a breeding animal population involves determining the inheritance pattern of genotypes for multiple genetic markers across the individuals in the populatio...