MaTSE: the gene expression time-series explorer.
Journal Article
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2013)
MaTSE: the gene expression time-series explorer. BMC bioinformatics, 14, https://doi.org/10.1186/1471-2105-14-S19-S1
Background
High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatmen...
MaTSE: The microarray time-series explorer
Conference Proceeding
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2012)
MaTSE: The microarray time-series explorer. In 2012 IEEE Symposium on Biological Data Visualization (BioVis), (41-48). https://doi.org/10.1109/biovis.2012.6378591
This paper describes the design, development and evaluation of the Microarray Time-Series Explorer (MaTSE), a novel information visualization application for the exploratory a...
Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data.
Conference Proceeding
Craig, P., Cannon, A., Kennedy, J., & Kukla, R. (2010)
Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. In Y. Luo (Ed.), Cooperative Design, Visualization, and Engineering, 199-206. https://doi.org/10.1007/978-3-642-16066-0_30
This paper presents work to support collaborative visualisation and data analysis in the microarray time-series explorer (MaTSE) software. We introduce a novel visualisation c...
RKB: A Knowledge base to support research documentation, data, GIS, spatial data and communications for a major rail freight project.
Conference Proceeding
Wigan, M., Kukla, R., Benjamins, M., & Grashoff, P. (2006)
RKB: A Knowledge base to support research documentation, data, GIS, spatial data and communications for a major rail freight project. In Proceedings of the European Transport Conference 2007
The paper places data and document access, use and exploration systems in the context of the Data Observatories movement, as well as the document repository systems now becomi...
Developing a core ontology for taxonomic data.
Conference Proceeding
Kennedy, J., Gales, R., Hyam, R., Kukla, R., Wieczorek, J., Hagedorn, G., …Vieglais, D. (2006)
Developing a core ontology for taxonomic data. In L. Belbin, A. Rissoné, & A. Weitzman (Eds.), Proceedings of TDWG (2006), St Louis, MI
Over recent years several sub-groups within the Taxonomic Databases Working Group (TDWG) have developed models and exchange standards to facilitate data sharing within the tax...
Converting an existing taxonomic data resource to employ an ontology and LSIDs.
Conference Proceeding
Kennedy, J., Gales, R., & Kukla, R. (2006)
Converting an existing taxonomic data resource to employ an ontology and LSIDs. In L. Belbin, A. Rissoné, & A. Weitzman (Eds.), Proceedings of TDWG (2006), St Louis, MI
Data sharing is fundamental to biodiversity and taxonomic data applications, however previous attempts at developing mechanisms to facilitate sharing within the community have...
A standard data model representation for taxonomic information.
Journal Article
Kennedy, J., Hyam, R., Kukla, R., & Paterson, T. (2006)
A standard data model representation for taxonomic information. OMICS, 10, 220-230. doi:10.1089/omi.2006.10.220
The names used by biologists to label the observations they make are imprecise. This is an issue as workers increasingly seek to exploit data gathered from multiple, unrelated...
A comparison of video and infrared based tracking of pedestrian movements.
Conference Proceeding
Kerridge, J., Kukla, R., Willis, A., Armitage, A., Binnie, D., & Lei, L. (2005)
A comparison of video and infrared based tracking of pedestrian movements. In S. P. Hoogendoom, S. Luding, P. H. L. Bovy, M. Schreckenberg, & D. E. Wolf (Eds.), Traffic and granular flow 03, 383-392. https://doi.org/10.1007/3-540-28091-X_37
We provide a comparison of the relative merits of video and infrared based methods for collecting pedestrian movements from the real world and also from experimental environme...
Scientific names are ambiguous as identifiers for biological taxa: their context and definition are required for accurate data integration
Conference Proceeding
Kennedy, J., Kukla, R., & Paterson, T. (2005)
Scientific names are ambiguous as identifiers for biological taxa: their context and definition are required for accurate data integration. In B. Ludaescher, & L. Raschid (Eds.), Data Integration in the Life Sciences, 80-95. https://doi.org/10.1007/11530084_8
Biologists use scientific names to label the organisms described in
their data; however, these names are not unique identifiers for taxonomic entities.
Alternative taxonomic c...
Human movement behaviour in urban spaces: Implications for the design and modelling of effective pedestrian environments.
Journal Article
Willis, A., Gjersoe, N., Havard, C., Kerridge, J. & Kukla, R. (2004)
Human movement behaviour in urban spaces: Implications for the design and modelling of effective pedestrian environments. Environment and planning. B, Planning & design. 31, 805-828. doi:10.1068/b3060. ISSN 1472-3417
Despite a burgeoning research effort directed at the design and modelling of effective urban spaces for pedestrians, remarkably little is known about how pedestrians actually ...